Index Symbols | A | B | C | D | E | F | G | H | I | L | M | P | Q | R | S | T | V | W | X Symbols @dynamicAtlas (module) @lookupMap (module) @queriedSample (module) A addPaths() (@dynamicAtlas.dynamicAtlas method) alignVelocityMagnitude() (in module matchTime) anteriorMoveSegmentation() (in module stripeExtraction) applyOpticalFlow() (in module piv_handling) autoStripe7() (in module stripeExtraction) B basics (module) binnedstats() (in module statistics) buildLookup() (@dynamicAtlas.dynamicAtlas method) buildLookupMap() (in module @lookupMap) buildPIVStack() (@queriedSample.queriedSample method) buildStructWrtTime() (in module @lookupMap) C collapseCurves() (in module curve_handling) compareCurves() (in module curve_handling) coolwarm() (in module plotting) curve_handling (module) cutCurveIntoLeadingTrailingSegments() (in module stripeExtraction) D data (@queriedSample.queriedSample attribute) data_handling (module) define_colors() (in module plotting) define_markers() (in module plotting) diverging_cmap() (in module plotting) dynamicAtlas (@queriedSample.queriedSample attribute) (class in @dynamicAtlas) dynamicAtlas() (@dynamicAtlas.dynamicAtlas method) E ensureDir() (in module basics) ensurePIV() (@queriedSample.queriedSample method) external (module) extractMetricFromPIVPair() (in module piv_handling) extractStripeEdges() (in module stripeExtraction) F findDynamicGenotypeLabel() (@dynamicAtlas.dynamicAtlas method) findDynamicGenotypeLabelTime() (@dynamicAtlas.dynamicAtlas method) findDynamicGenotypeLabelWithPIV() (@dynamicAtlas.dynamicAtlas method) findDynamicLabel() (@lookupMap.lookupMap method) findDynamicLabelTime() (@lookupMap.lookupMap method) findEmbryo() (@dynamicAtlas.dynamicAtlas method) (@lookupMap.lookupMap method) findGenotypeLabel() (@dynamicAtlas.dynamicAtlas method) findGenotypeLabelTime() (@dynamicAtlas.dynamicAtlas method) findLabel() (@lookupMap.lookupMap method) findLabelTime() (@lookupMap.lookupMap method) findStaticGenotypeLabel() (@dynamicAtlas.dynamicAtlas method) findStaticLabel() (@lookupMap.lookupMap method) findStaticLabelTime() (@lookupMap.lookupMap method) findTime() (@dynamicAtlas.dynamicAtlas method) (@lookupMap.lookupMap method) flipThroughStackFindLayer() (in module tiff_handling) G genotypes (@dynamicAtlas.dynamicAtlas attribute) getData() (@queriedSample.queriedSample method) getGradients() (@queriedSample.queriedSample method) getMaxTime() (@queriedSample.queriedSample method) getMeanData() (@queriedSample.queriedSample method) getMeanPIV() (@queriedSample.queriedSample method) getMinTime() (@queriedSample.queriedSample method) getPIV() (@queriedSample.queriedSample method) GetPIV() (in module piv_handling) getPIVLab() (in module piv_handling) getsize() (in module basics) getSmooth() (@queriedSample.queriedSample method) gradients (@queriedSample.queriedSample attribute) H heatmap_on_alphaimage() (in module plotting) heatmap_on_image() (in module plotting) I inpaint_nans() (in module data_handling) interpolate_2color_cmap() (in module plotting) interpolate_3color_cmap() (in module plotting) L linecount() (in module basics) loadtiff() (in module tiff_handling) lookup (@dynamicAtlas.dynamicAtlas attribute) lookupMap (class in @lookupMap) lookupMap() (@lookupMap.lookupMap method) M makeGradientImages() (in module @dynamicAtlas) makeMasterTimeline() (@dynamicAtlas.dynamicAtlas method) makeMasterTimeLinePIV() (in module @dynamicAtlas) makeMasterTimeLineRealspace() (in module @dynamicAtlas) mapValueToColor() (in module plotting) matchTime (module) matchTimeSSR() (in module matchTime) meanPIV (@queriedSample.queriedSample attribute) medfilt1m() (in module data_handling) meta (@queriedSample.queriedSample attribute) morphologicalOpLoop() (in module stripeExtraction) P path (@dynamicAtlas.dynamicAtlas attribute) piv (@queriedSample.queriedSample attribute) piv_handling (module) PIVTimeseries() (in module piv_handling) plotColoredLinesegs() (in module plotting) plotting (module) pullbackPathlines() (in module piv_handling) Q queriedSample (class in @queriedSample) queriedSample() (@queriedSample.queriedSample method) R renameBatchFiles() (in module basics) renameBatchFilesSubdirs() (in module basics) renameBatchFilesSubSubdirs() (in module basics) rk4DynamicVelocity2D() (in module piv_handling) rk4FixedVelocity2D() (in module piv_handling) runMedianFilterOnPIVField() (in module piv_handling) S saveastiff() (in module tiff_handling) saveLookupMap() (@lookupMap.lookupMap method) scalarFieldOnImage() (in module plotting) scalarFieldOnSurface() (in module plotting) scalarVectorFieldsOnImage() (in module plotting) scalarVectorFieldsOnSurface() (in module plotting) shiftImagesX() (in module data_handling) slidingmax() (in module data_handling) smooth (@queriedSample.queriedSample attribute) springEnergy1D() (in module data_handling) ssrCurves() (in module stripeExtraction) statistics (module) stitchTiffMosaic() (in module tiff_handling) stripeExtraction (module) subdirs() (in module basics) T texture_patch_3d_heatmap2file() (in module plotting) tiff_handling (module) timeLineMethod (@dynamicAtlas.dynamicAtlas attribute) timeStamp() (@dynamicAtlas.dynamicAtlas method) (in module @queriedSample) timeStampMethod (@dynamicAtlas.dynamicAtlas attribute) timeStampStripe7() (in module @dynamicAtlas) V vectorFieldHeatPhaseOnImage() (in module plotting) vectorFieldQuiverOnImage() (in module plotting) W write_txt_with_header() (in module basics) writeTiffPages() (in module tiff_handling) X xcorr2fft() (in module piv_handling) XYZToRGB() (in module plotting)